mirror of
https://github.com/NixOS/nixpkgs.git
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8bd11af1c9
https://github.com/mdshw5/pyfaidx/releases/tag/v0.9.0.3 This commit was automatically generated using update-python-libraries.
60 lines
1.1 KiB
Nix
60 lines
1.1 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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glibcLocales,
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importlib-metadata,
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packaging,
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htslib,
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fsspec,
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pytestCheckHook,
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biopython,
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setuptools,
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setuptools-scm,
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}:
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buildPythonPackage rec {
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pname = "pyfaidx";
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version = "0.9.0.3";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "mdshw5";
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repo = "pyfaidx";
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tag = "v${version}";
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hash = "sha256-R8k1h2FAlA/6eTJqH/Z2jHAyis2w5VDd1LcyE1hgbFc=";
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};
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build-system = [
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setuptools
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setuptools-scm
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];
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dependencies = [
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importlib-metadata
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packaging
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];
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nativeCheckInputs = [
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pytestCheckHook
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biopython
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htslib
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fsspec
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glibcLocales
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];
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pythonImportsCheck = [ "pyfaidx" ];
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preCheck = ''
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bgzip --keep tests/data/genes.fasta
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'';
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meta = {
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description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
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homepage = "https://github.com/mdshw5/pyfaidx";
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changelog = "https://github.com/mdshw5/pyfaidx/releases/tag/${src.tag}";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [ jbedo ];
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mainProgram = "faidx";
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};
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}
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