mirror of
https://github.com/NixOS/nixpkgs.git
synced 2026-03-08 09:24:20 +01:00
143 lines
2.4 KiB
Nix
143 lines
2.4 KiB
Nix
{
|
|
lib,
|
|
buildPythonPackage,
|
|
fetchFromGitHub,
|
|
|
|
# build-system
|
|
hatch-docstring-description,
|
|
hatch-fancy-pypi-readme,
|
|
hatch-min-requirements,
|
|
hatch-vcs,
|
|
hatchling,
|
|
|
|
# dependencies
|
|
numpy,
|
|
|
|
# optional-dependencies
|
|
# accel
|
|
numba,
|
|
# dask
|
|
dask,
|
|
# doc
|
|
furo,
|
|
pytest,
|
|
sphinx,
|
|
sphinx-autodoc-typehints,
|
|
# full
|
|
h5py,
|
|
zarr,
|
|
# test
|
|
anndata,
|
|
numcodecs,
|
|
# test-min
|
|
coverage,
|
|
pytest-codspeed,
|
|
pytest-doctestplus,
|
|
pytest-xdist,
|
|
# testing
|
|
packaging,
|
|
|
|
# tests
|
|
pytestCheckHook,
|
|
scipy,
|
|
}:
|
|
|
|
buildPythonPackage (finalAttrs: {
|
|
pname = "fast-array-utils";
|
|
version = "1.3.1";
|
|
pyproject = true;
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "scverse";
|
|
repo = "fast-array-utils";
|
|
tag = "v${finalAttrs.version}";
|
|
hash = "sha256-FUzCdDFDqP+izlSWruWzslfPayzRN7MFx1LOikyMDss=";
|
|
};
|
|
|
|
# hatch-min-requirements tries to talk to PyPI by default. See https://github.com/tlambert03/hatch-min-requirements?tab=readme-ov-file#environment-variables.
|
|
env.MIN_REQS_OFFLINE = "1";
|
|
|
|
build-system = [
|
|
hatch-docstring-description
|
|
hatch-fancy-pypi-readme
|
|
hatch-min-requirements
|
|
hatch-vcs
|
|
hatchling
|
|
];
|
|
|
|
dependencies = [
|
|
numpy
|
|
];
|
|
|
|
optional-dependencies = lib.fix (self: {
|
|
accel = [
|
|
numba
|
|
];
|
|
dask = [
|
|
dask
|
|
];
|
|
doc = [
|
|
furo
|
|
pytest
|
|
# scanpydoc
|
|
sphinx
|
|
sphinx-autodoc-typehints
|
|
# sphinx-autofixture
|
|
];
|
|
full = [
|
|
h5py
|
|
zarr
|
|
]
|
|
++ self.accel
|
|
++ self.dask
|
|
++ self.sparse;
|
|
sparse = [
|
|
scipy
|
|
];
|
|
test = [
|
|
anndata
|
|
numcodecs
|
|
zarr
|
|
]
|
|
++ self.accel
|
|
++ self.test-min;
|
|
test-min = [
|
|
coverage
|
|
pytest
|
|
pytest-codspeed
|
|
pytest-doctestplus
|
|
pytest-xdist
|
|
]
|
|
++ self.sparse
|
|
++ self.testing;
|
|
testing = [
|
|
packaging
|
|
];
|
|
});
|
|
|
|
nativeCheckInputs = [
|
|
dask
|
|
numba
|
|
pytest-codspeed
|
|
pytest-doctestplus
|
|
pytestCheckHook
|
|
scipy
|
|
];
|
|
|
|
pythonImportsCheck = [
|
|
"fast_array_utils.conv"
|
|
"fast_array_utils.types"
|
|
"fast_array_utils.typing"
|
|
"fast_array_utils"
|
|
];
|
|
|
|
meta = {
|
|
description = "Fast array utilities";
|
|
homepage = "https://icb-fast-array-utils.readthedocs-hosted.com";
|
|
changelog = "https://github.com/scverse/fast-array-utils/releases/tag/${finalAttrs.src.tag}";
|
|
license = lib.licenses.mpl20;
|
|
maintainers = with lib.maintainers; [
|
|
samuela
|
|
];
|
|
};
|
|
})
|